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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015903723.1_cds_XP_016453852.1_47938
CDS Infomation

[gene=LOC107778161] [db_xref=GeneID:107778161] [protein=histidine--tRNA ligase, chloroplastic/mitochondrial-like] [protein_id=XP_016453852.1] [location=complement(join(39113..39251,39386..39549,41006..41134,41304..41446,41863..41980,44274..44348,46909..47001,48146..48275,48446..48534,50914..51009,51089..51427))] [gbkey=CDS]
Sequence

ATGCCGGCAATTTTAAACCCTTCCCTCCTTATCCTCCACCACAACCACCACTACCCACGA
TTGTCGACGGCGGTACTGTCACTCCGCCACCACCTCACCCTCTCTCTCTTTTCACCTTCA
CGCACTACTCTCAGAGGTTTCTCTACTTCTTCCTCCTCATTGTCCATAGAATCATCGGCA
AACCAGAATGTTCGAACCGGACGGTCCGGCTCAGTGAGTTCTCCTCCAGTTGAACACAAT
ACTGCTGAGAAAATCGACGTCAATCCTCCCAAAGGTACCCGAGATTTCCCCCCTGACGAC
ATGCGCCTCCGCACTTGGCTCTTCCATAACTTCAGAGAGGTATCGAAGCAATTCGGGTTT
GAAGAGGTCGATTTTCCTGTGCTAGAGTCAGAGGCTCTTTATATTAGGAAGGCTGGGGAG
GAAATTAGAGACCAGCTTTACTGTTTTGAGGACCGTGGAAACCGTCGAGTTGCATTGAGG
CCCGAGCTGACTCCTTCATTGGCAAGACTTGTGATACAGAAAGGAAAATCTGTATCTCTT
CCATTAAAATGGTTTGCTATTGGACAGTGCTGGCGTTATGAGAGAATGACCAGGGGAAGA
CGTCGTGAACATTACCAATGGAATATGGATATAATTGGTGTACCAGATGTAACGGCTGAA
GCAGAGCTGATATCTTCAATTATTACCTTCTTCAAGCGCATAGGCCTCACAGCATCAGAT
GTTGGGTTTAAGGTCTCCAGTAGAAAGGTCTTGCAAGAAGTGTTGAGGTGCTATTCCGTC
CCAGAAGACATGTTTGGTAGAGTTTGCATCATTATAGACAAGATTGGAAAGATTCCAATG
GATGATATCAGGAAAGATCTGCAGTCGGCTGATATGTCAGAGGTAGCTATTGAAGAGCTA
TTGCAAGTCCTGTCACTGAAGTCTTTGGCAAAGTTAGAAGAGAAACTTGGGGCCTCAGGA
GAAGCACTATCTGATTTGAAGCAATTATTCTCGCTTGCTGAAAAGTATGGCTATTCAGAG
TGGCTTCAGTTTGATGCATCAATTGTTCGTGGTTTGGCATATTACACTGGGATTGTCTTT
GAGGGATTTGATCGTGAAGGAAAGCTCCGGGCTATATGTGGTGGTGGACGATATGATCGG
CTATTGTCTACCTTTGGAGGTGATGATCTTCCAGCTTGTGGATTTGGATTTGGTGATGCT
GTAATAGTAGAACTGCTCAAGGAGAGGGGACTTCTACCAGAACTTAACCTCCAAGTAGAG
AACATTGTGTGCTCACTGGATCAGGAACTTCAAGGTGCGGCATCAGCAGTTGCAACTATT
CTCAGGGAAAAAGGGCAAAGCGTTGATTTGGTTTTGGAGAACAAGCCACTTAAGTGGGTG
TTCAAGCGAGCAGCACGGATAAATGCACGCAGATTGATTTTGGTCGGAAATGCTGAATGG
CAAAAAGGTATGGTTAATGTTAAGACTCTTTCAACAGGTGAGCAATTGGAGATAAAAATC
GATGAACTGGAGTAA

Peptide Sequence

PEP ID

XP_016453852.1
PEP Infomation

PREDICTED: histidine--tRNA ligase, chloroplastic/mitochondrial-like [Nicotiana tabacum]
Sequence

MPAILNPSLLILHHNHHYPRLSTAVLSLRHHLTLSLFSPSRTTLRGFSTSSSSLSIESSA
NQNVRTGRSGSVSSPPVEHNTAEKIDVNPPKGTRDFPPDDMRLRTWLFHNFREVSKQFGF
EEVDFPVLESEALYIRKAGEEIRDQLYCFEDRGNRRVALRPELTPSLARLVIQKGKSVSL
PLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVPDVTAEAELISSIITFFKRIGLTASD
VGFKVSSRKVLQEVLRCYSVPEDMFGRVCIIIDKIGKIPMDDIRKDLQSADMSEVAIEEL
LQVLSLKSLAKLEEKLGASGEALSDLKQLFSLAEKYGYSEWLQFDASIVRGLAYYTGIVF
EGFDREGKLRAICGGGRYDRLLSTFGGDDLPACGFGFGDAVIVELLKERGLLPELNLQVE
NIVCSLDQELQGAASAVATILREKGQSVDLVLENKPLKWVFKRAARINARRLILVGNAEW
QKGMVNVKTLSTGEQLEIKIDELE

Transcript Sequence

Gene sequence data has not been registered.